refactor: reorganize project structure for better maintainability

- Move 45 debug/test files from root to organized scripts/ directories
- Secure public/ directory by removing debug files (security improvement)
- Create structured scripts organization:
  • scripts/debug/      (20 files) - Framework debugging tools
  • scripts/test/       (18 files) - Test and validation scripts
  • scripts/maintenance/ (5 files) - Maintenance utilities
  • scripts/dev/         (2 files) - Development tools

Security improvements:
- Removed all debug/test files from public/ directory
- Only production files remain: index.php, health.php

Root directory cleanup:
- Reduced from 47 to 2 PHP files in root
- Only essential production files: console.php, worker.php

This improves:
✅ Security (no debug code in public/)
✅ Organization (clear separation of concerns)
✅ Maintainability (easy to find and manage scripts)
✅ Professional structure (clean root directory)

scripts/debug/debug-contexts.php

@@ -0,0 +1,87 @@
+<?php
+
+declare(strict_types=1);
+
+use App\Framework\Attributes\Route;
+use App\Framework\Core\AppBootstrapper;
+use App\Framework\Discovery\Results\DiscoveryRegistry;
+use App\Framework\Performance\EnhancedPerformanceCollector;
+use App\Framework\DateTime\SystemClock;
+use App\Framework\DateTime\SystemHighResolutionClock;
+use App\Framework\Performance\MemoryMonitor;
+use App\Framework\DI\Initializer;
+
+require __DIR__ . '/vendor/autoload.php';
+require __DIR__ . '/src/Framework/Debug/helpers.php';
+
+echo "DEBUG: Starting context analysis\n";
+
+// Create dependencies for enhanced performance collector
+$basePath = __DIR__;
+$clock = new SystemClock();
+$highResClock = new SystemHighResolutionClock();
+$memoryMonitor = new MemoryMonitor();
+$collector = new EnhancedPerformanceCollector($clock, $highResClock, $memoryMonitor, enabled: true);
+
+echo "DEBUG: About to create AppBootstrapper\n";
+$bootstrapper = new AppBootstrapper($basePath, $collector, $memoryMonitor);
+
+echo "DEBUG: About to bootstrap web app\n";
+$app = $bootstrapper->bootstrapWeb();
+
+echo "DEBUG: Web app bootstrapped successfully\n";
+
+// Get container from the app
+$reflection = new ReflectionObject($app);
+$containerProperty = $reflection->getProperty('container');
+$containerProperty->setAccessible(true);
+$container = $containerProperty->getValue($app);
+
+echo "DEBUG: Got container from app\n";
+
+// Check if DiscoveryRegistry is available
+if ($container->has(DiscoveryRegistry::class)) {
+    echo "DEBUG: DiscoveryRegistry is available in container\n";
+    $registry = $container->get(DiscoveryRegistry::class);
+    
+    $initializerCount = $registry->attributes->getCount(Initializer::class);
+    echo "DEBUG: Found $initializerCount initializer attributes in registry\n";
+    
+    if ($initializerCount > 0) {
+        $initializers = $registry->attributes->get(Initializer::class);
+        echo "DEBUG: Looking for router-related initializers\n";
+        
+        foreach ($initializers as $initializer) {
+            $className = $initializer->className->getFullyQualified();
+            
+            if (str_contains($className, 'Router') || str_contains($className, 'Route')) {
+                echo "  ROUTER INITIALIZER: $className\n";
+                
+                // Get the attribute instance to see the contexts
+                $attributeInstance = $initializer->createAttributeInstance();
+                if ($attributeInstance instanceof \App\Framework\DI\Initializer) {
+                    $contexts = $attributeInstance->contexts;
+                    if (empty($contexts)) {
+                        echo "    CONTEXTS: ALL (no restrictions)\n";
+                    } else {
+                        $contextNames = array_map(function($ctx) {
+                            return $ctx instanceof \App\Framework\Context\ContextType ? $ctx->name : (string)$ctx;
+                        }, $contexts);
+                        echo "    CONTEXTS: " . implode(', ', $contextNames) . "\n";
+                    }
+                }
+                
+                // Check additionalData for debugging
+                if (isset($initializer->additionalData['contexts'])) {
+                    echo "    STORED CONTEXTS: " . print_r($initializer->additionalData['contexts'], true);
+                }
+            }
+        }
+    } else {
+        echo "DEBUG: No initializers found in registry\n";
+    }
+} else {
+    echo "DEBUG: DiscoveryRegistry is NOT available in container\n";
+}
+
+echo "DEBUG: Context analysis complete\n";